Abstract
Paragangliomas (PGLs) have widely different metastastic potentials. Two different types of PGLs can be defined by expression profiling. Cluster 1 PGLs exhibit VHL and/or succinate dehydrogenase (SDH) mutations and a pseudohypoxic phenotype. RET and neurofibromatosis type 1 (NF1) mutations occur in cluster 2 tumors characterized by deregulation of the RAS/RAF/MAP kinase signaling cascade. Sporadic PGLs can exhibit either profile. During sustained hypoxia, a natural antisense transcript of hypoxia-inducible factor 1 (aHIF) is expressed. The role of aHIF in the metastatic potential of PGL has not yet been investigated. The aim was to test the hypothesis that genotype-specific overexpression of aHIF is associated with an increased metastatic potential. Tumor samples were collected from 87 patients with PGL. Quantitative PCR was performed for aHIF, vascular endothelial growth factor (VEGF), aquaporin 3, cytochrome b561, p57Kip2, slit homolog 3, and SDHC. Expression was related to mutation status, benign versus malignant tumors, and metastasis-free survival. We found that both aHIF and VEGF were overexpressed in cluster 1 PGLs and in metastatic tumors. In contrast, slit homolog 3, p57Kip2, cytochrome b561, and SDHC showed overexpression in non-metastatic tumors, whereas no such difference was observed for aquaporin 3. Patients with higher expression levels of aHIF and VEGF had a significantly decreased metastasis-free survival. Higher expression levels of SDHC are correlated with an increased metastasis-free survival. In conclusion, we not only demonstrate a higher expression of VEGF in cluster 1 PGL, fitting a profile of pseudohypoxia and angiogenesis, but also of aHIF. Moreover, overexpression of aHIF and VEGF marks a higher metastatic potential in PGL.
Introduction
Paragangliomas (PGLs) are catecholamine-producing tumors that originate from chromaffin cells of the adrenal medulla (pheochromocytoma proper) or from sympathetic neuronal tissue in extra-adrenal locations of the abdomen or chest (DeLellis et al. 2004). PGLs in the head and neck usually derive from parasympathetic tissues. Metastases occur in 10–15% of patients with PGL (Lenders et al. 2005). It was observed that 25–30% of the PGLs are caused by germline mutations of one of the susceptibility genes (Gimenez-Roqueplo et al. 2008), i.e. the proto-oncogene RET and the tumor suppressor genes von Hippel–Lindau (VHL), neurofibromatosis type 1 (NF1), and succinate dehydrogenase subunits A–D (SDHA/B/C/D) (Baysal 2008). Mutations in the VHL and/or SDH genes result in a phenotype known as pseudohypoxia (Gimenez-Roqueplo et al. 2001, Kaelin 2007), leading to uncontrolled expression of HIF-1-regulated genes, such as vascular endothelial growth factor (VEGF) which in turn facilitates angiogenesis. The signature of hypoxia and angiogenesis is not limited to VHL- and/or SDH-related tumors and is also prominent in a subset of sporadic PGLs, as shown by tumor gene expression profiling (Dahia et al. 2005). These ‘cluster 1’ tumors are distinct from ‘cluster 2’ tumors, which include RET- and NF1-related and another subset of sporadic PGLs (Dahia et al. 2005). This latter cluster is characterized by the deregulation of the RAS/RAF/MAP kinase signaling cascade.
High expression of HIF-1α and VEGF is associated with higher tumor aggressiveness and an unfavorable prognosis in many types of solid cancers (Manders et al. 2003, Hoogsteen et al. 2007). Hypoxia initially induces increased expression of HIF-1α, but during sustained hypoxia, the amount of HIF-1α mRNA is reduced (Wenger et al. 1998). Instead, there is considerable overexpression of the HIF-1α natural antisense transcript (aHIF), which encodes the antisense template of the 3′-untranslated region of HIF-1α mRNA (Thrash-Bingham & Tartof 1999). This represents a negative feedback loop, in which aHIF inhibits the translation of HIF-1α mRNA after chronic hypoxia (Uchida et al. 2004). A 20% of the human genome consists of these naturally occurring antisense transcripts, which regulate gene transcription, RNA splicing, polyadenylation, editing, stability, transport, and translation (Yelin et al. 2003, Chen et al. 2004, Katayama et al. 2005). Importantly, besides acting as a transcription factor for hypoxia-inducible genes, HIF-1α also stabilizes the tumor suppressor gene p53 under early hypoxic conditions (An et al. 1998). This situation is reversed during later stages of hypoxia, when HIF-1α translation is inhibited by aHIF (Uchida et al. 2004), resulting in the loss of p53 followed by deregulated cell proliferation. Thus, aHIF expression also allows tumor cells to survive hypoxia without inducing the tumor suppressor p53 (Thrash-Bingham & Tartof 1999). Theoretically, aHIF expression is not mainly a phenotypical sign of chronic hypoxia but also in itself mechanistically associated with more aggressive tumor behavior and increased metastatic potential (Cayre et al. 2003).
So far, the role of aHIF in the pathophysiology of PGL had not been investigated. We hypothesize that there is a genotype-specific overexpression of aHIF expression in PGL, which is associated with an increased metastatic potential. To test this hypothesis, we performed quantitative RT-PCR of aHIF and other cluster-specific genes (VEGF, aquaporin 3, cytochrome b561, p57Kip2, slit homolog 3, and SDHC) in PGLs of different genotypes and investigated the relation between expression of these genes and metastasis-free survival (Dahia et al. 2005).
Materials and methods
Patients
Totally, 151 patients with histologically proven pheochromocytoma or extra-adrenal sympathetic PGL evaluated at the Departments of Endocrinology and General Internal Medicine at the Radboud University Nijmegen Medical Centre (RUNMC) underwent surgical resection of primary PGL between November 1967 and November 2008. Details on the post-surgical follow-up of part of this cohort were published elsewhere (Timmers et al. 2008). Frozen primary tumor tissue was obtained from 87 patients (41 males and 46 females), five of whom underwent surgery at the Erasmus MC in Rotterdam. Tumors were adrenal in 76 cases and extra-adrenal abdominal in 11 cases. The presence of germline mutations and large deletions of RET, VHL, NF1, and SDHB/C/D was investigated at the Department of Genome Diagnostics of the University Medical Centre in Utrecht according to standard procedures. Clinical characteristics and genotypes are listed in Table 1. In 44 patients with an apparently sporadic presentation, i.e. no family history and lack of syndromal features, full germline testing of all susceptibility genes was omitted. In these cases, SDHB immunostaining was carried out on tumor tissues to investigate the functional integrity of SDH (see below). Mutations in SDHB, SDHC, or SDHD genes lead to lack of SDHB immunoreactivity and thus can be used to reveal germline mutations in these genes (van Nederveen et al. 2009).
Clinical characteristics of paraganglioma (PGL) patients
Variable | PGL patients (n=87) |
---|---|
Age (years) | |
Diagnosis mean±s.d. | 46.05±16.17 |
Diagnosis range | 7–77 |
Gender | |
Male | 41 |
Female | 46 |
Primary tumor location | |
Adrenal | 76 |
Extra-adrenal | 11 |
Tumor size (cm) | |
Mean±s.d. | 6.40±3.42 |
Range | 1.4–18 |
Genotype | |
SDHB | 3 |
SDHD | 1 |
VHL | 3 |
MEN2A | 10 |
MEN2B | 1 |
NF1 | 7 |
Sporadica | 18 (16 adrenal, two extra-adrenal) |
Apparently sporadic | 44 (39 adrenal, five extra-adrenal; 37/37 SDH-negativeb) |
Total follow-up (years) | |
Mean±s.d. | 7.04±5.07 |
Range | 0.05–20.83 |
Metastases | |
No | 80 |
Yes | 7 |
SDHB, SDHC, SDHD, and MEN2 mutations and large deletions ruled out by germline testing.
As assessed by positive SDHB immunohistochemistry.
During a mean±s.d. follow-up of 7.04±5.07 (range: 0.05–20.83) years, seven (8%) developed metastatic disease (Table 2). The mean±s.d. interval between surgery and the diagnosis of metastases was 5.50±8.15 (range: 0.00–19.38) years. Of the total patients, 16 patients died, including five with metastatic PGL. Data were collected under conditions of regular clinical care, with the approval of ethics committee obtained for the use of those data for scientific purposes.
Characteristics of the patients with metastatic paraganglioma
Patient | Age at diagnosis | Gender | Primary tumor location | Tumor size (cm) | Genotype | Total follow-up (years) | Time until metastases (years) | Deceased | Survival (years) |
---|---|---|---|---|---|---|---|---|---|
1 | 53 | F | Extra-adrenal | 7 | SDHB | 9.99 | 2.27 | Yes | 9.99 |
2 | 20 | M | Extra-adrenal | 7 | SDHB | 20.96 | 19.38 | No | 20.96 |
3 | 58 | M | Adrenal | 17 | SDH negativea | 16.32 | 15.10 | Yes | 16.32 |
4 | 44 | F | Adrenal | 7 | SDH negativea | 0.61 | 0.61 | Yes | 0.61 |
5 | 40 | M | Adrenal | 13 | SDH negativea | 1.19 | 0.00 | Yes | 1.26 |
6 | 61 | M | Adrenal | 12 | SDH negativea | 2.34 | 0.00 | No | 2.34 |
7 | 42 | M | Adrenal | 8.5 | Sporadic | 4.26 | 1.13 | Yes | 4.26 |
As assessed by positive SDHB immunohistochemistry.
SDHB immunohistochemistry
Of the 44 patients with apparently sporadic presentation, immunohistochemistry was performed in 37 patients to detect the expression of SDHB. Sections (4 μm) from paraffin-embedded tumor tissues were stained as described previously (van Nederveen et al. 2009) using an anti-human rabbit polyclonal primary antibody (Sigma–Aldrich, HPA002868, 1:200).
Tumor tissue processing
Representative snap-frozen tumor samples were cut in approximately five sections of 20 μm in a cryostat at −20 °C, put in lysis buffer (RLT, Qiagen), and stored at −80 °C until RNA isolation. For histological confirmation, additional slices were H&E stained for histological re-evaluation by a pathologist.
RNA extraction
Total RNA was extracted using the RNeasy Mini Kit (Qiagen) with on-column DNase-I treatment. RNA concentrations were determined by measuring the spectrophotometric absorption at 260 nm using the GeneQuant (Amersham).
RT reaction
cDNA synthesis was performed using 10 μl sample volume, containing ∼1 μg total RNA and 10 μl RT-mix, with a total volume of 20 μl. cDNA synthesis was performed using a PTC-200 PCR apparatus (MJ Research, Waltham, MA, USA). Samples were denatured for 10 min at 70 °C and immediately cooled on ice. After random hexamers were annealed for 10 min at 21 °C, cDNA synthesis was performed for 45 min at 42 °C, followed by an enzyme inactivation step for 5 min at 99 °C.
Quantitative PCR
For the quantitative PCR (qPCR), SYBR Green assays were used for aHIF and VEGF, and Taqman for aquaporin 3 (Gill blood group), cytochrome b561, p57Kip2, slit homolog 3 (Drosophila melanogaster), and SDHC. The latter five genes were selected because in a previous study by Dahia et al. (2005), their RNA expression was shown to mark either cluster 1 or 2 PGL. Overexpression of VEGF and aquaporin 3 mark cluster 1 tumors, whereas cytochrome b561, P57Kip2, slit homolog 3, and SDHC mark cluster 2 tumors. qPCR was performed using the Taqman Universal PCR Master Mix or SYBR. Green Universal Master Mix (PE Applied Biosystems, Nieuwerkerk aan den IJssel, The Netherlands) in a total volume of 25 μl. The forward and reverse primers, as well as the optimal concentrations (for each target gene), were optimized in previous studies at the Department of Laboratory Medicine of the RUNMC for the SYBR Green assays, whereas Assays on Demand (PE Applied Biosystems) was used for the Taqman-based assays. Hypoxanthine–guanine phosphoribosyltransferase (HPRT1) was used as a housekeeping gene for normalization of all samples (de Kok et al. 2005). qPCR was performed using the ABI Prism 7700 Sequence Detector (PE Applied Biosystems). The amplification reactions were carried out with denaturation at 95 °C for 10 min, 40 cycles of 15 s at 95 °C (melting), and 60 s at 60 °C (annealing and elongation).
Statistical analysis
Statistical analysis was performed using Statistical Package for the Social Sciences (for Windows 16.0; SPSS 16.0, Chicago, IL, USA). Aquaporin-3 mRNA levels were normally distributed (one-sample Kolmogorov–Smirnov), whereas those of other genes were not. After log transformation, a normal distribution of mRNA expression was found for the other genes. Thus, parametric tests were used for all the log-transformed mRNA levels, with the exception of aquaporin-3, which was already normally distributed before log transformation. ANOVA with post hoc Tukey HSD test was used to test for the differences in mRNA expression of the target genes between clusters 1 and 2 PGLs, sporadic PGLs, and apparently sporadic PGLs with unknown genotype. Differences in the mRNA expression between metastatic and non-metastatic tumors were tested using an independent samples t-test. In addition, the relation between expression of individual genes and metastasis-free survival was investigated. Normalized mRNA levels of an individual target gene were correlated with metastasis-free survival after dichotomizing on the basis of the median mRNA expression of individual genes using univariate Cox regression survival analysis. Metastasis-free survival of patients with an above versus below median expression was compared using the Kaplan–Meier method and a log-rank test for equality of survival distributions. A similar analysis was performed for overall survival.
Results
SDHB expression in apparently sporadic tumor tissues
The presence of SDHB immunoreactivity and a granular staining pattern typical of mitochondrial proteins was detected in all the tumor tissues of apparently sporadic cases. This includes the four metastatic cases with incomplete germline mutation testing (Supplementary figure, see section on supplementary data given at the end of this article).
Genotype-specific mRNA expression
Figure 1 illustrates the differences in mRNA expression of the individual target genes between sporadic PGLs (n=18), apparently sporadic PGLs (n=44), and cluster 1 PGLs (SDHB (n=3), SDHD (n=1), and VHL (n=3)) and cluster 2 PGLs (MEN2A (n=10), MEN2B (n=1), and NF1 (n=7)). After performing an ANOVA with post hoc Tukey HSD test to compare mRNA expression of individual genes, both VEGF (Fig. 1A) and aHIF (Fig. 1B) expression was found to be significantly higher in cluster 1 compared with cluster 2 PGLs (P=0.018 and P=0.021 respectively). Sporadic and apparently sporadic tumors exhibited expression levels that were not significantly different from clusters 1 and 2 tumors. No differences were found in aquaporin 3, cytochrome b561, p57Kip2, slit homolog 3, or SDHC expression (not shown).
To further explore the significantly higher expression of VEGF and aHIF in cluster 1 compared with cluster 2 PGLs, genotype-specific mRNA expression levels are shown in Fig. 2. SDHB, SDHD, and VHL (cluster 1) tumors on an average exhibit higher expression levels for both aHIF and VEGF than MEN2A-, MEN2B-, and NF1 (cluster 2)-related tumors. The size of the subgroups precluded relevant statistical analyses.
mRNA expression and metastasis-free survival
The mRNA expression of each gene in non-metastatic PGLs (n=80) versus the mRNA expression in the primary tumors of metastatic PGLs (n=7) is visualized in Fig. 3. The RNA expression of both VEGF (P=0.001) and aHIF (P=0.001) was significantly higher in the primary tumors of PGLs that metastasized during follow-up than in the non-metastatic PGLs (Fig. 3A and B). Aquaporin-3 expression was not significantly different between groups (Fig. 3C), whereas the expression of slit homolog 3 (P=0.019), p57KIP2 (P=0.035), cytochrome b561 (P=0.003), and SDHC (P=0.039) was significantly higher in the non-metastatic group than in the metastatic group (Fig. 3D–G).
Subsequently, we assessed whether metastasis-free survival differed between the group of patients after dichotomization at the median expression level using a Kaplan–Meier analysis with log-rank testing. This analysis indicates that high expression of VEGF is associated with decreased metastasis-free survival (Fig. 4A; P=0.004). This is also true for high aHIF expression (Fig. 4B; P=0.011). Among the seven metastatic cases, high VEGF and aHIF expression did not seem to correlate with (metastasis free) survival (data not shown). An opposite effect was observed for SDHC expression (Fig. 4G; P=0.008). For the other genes, metastasis-free survival was not significantly different between the high- versus low-expression groups, although low levels of expression were without exception associated with poor prognosis. Overall survival was not significantly different between the high- versus low-expression groups, although there was trend toward a higher mortality in patients with high VEGF expression (P=0.067, data not shown).
Discussion
This is the first study in which the role of the natural antisense transcript aHIF is investigated in PGL. We found that aHIF, along with VEGF, is overexpressed in PGLs with a pseudohypoxic signature due to SDH and VHL mutations. Overexpression of both factors is also associated with a decreased metastasis-free survival, marking an increased malignant potential of apparently benign primary PGLs. Conversely, slit homolog 3, p57Kip2, cytochrome b561, and SDHC showed overexpression in non-metastatic tumors, whereas no difference was observed for aquaporin 3. Higher expression levels of SDHC are correlated with an increased metastasis-free survival.
HIF1a regulates the transcription of a number of genes that are known to be involved in tumorigenesis and angiogenesis (Selak et al. 2005), including VEGF (Forsythe et al. 1996). In VHL disease, stabilization of HIF1a in PGL tumor cells is the result of decreased pVHL-dependent proteasomal degradation of HIF1a by the E3 ubiquitin ligase complex, after being hydroxylated by prolyl hydroxylase (Kaelin 2007). In case of underlying mutations of the mitochondrial enzyme SDH, succinate accumulation inhibits prolyl hydroxylase activity and consequently HIFa stabilization (Selak et al. 2005). As shown in SDHA-, B-, and D-associated PGL, abolishment of SDH activity results in overexpression of VEGF, a target gene of HIF1a (Gimenez-Roqueplo et al. 2001, 2002, Burnichon et al. 2010). Mitochondrial dysfunction due to SDH mutations and activation of the hypoxic pathway is probably interlinked with other mechanisms of tumorigenesis involving oxidative stress and apoptosis resistance (Gottlieb & Tomlinson 2005). Reactive oxygen species were shown to inhibit the action of prolyl hydroxylase, thereby increasing HIF-1α and VEGF availability (Pouyssegur & Mechta-Grigoriou 2006). Another important theory interlinking the pathogenesis of different hereditary forms of PGL pertains to the developmental culling of sympathetic neuronal precursor cells by affecting c-Jun-dependent neuronal apoptosis following withdrawal of neuronal growth factor (Lee et al. 2005).
The role of hypoxia and angiogenesis as a pathophysiological mechanism in a subset of PGLs was confirmed by gene expression profiling studies by Dahia et al. (2005). PGLs caused by germline VHL and SDH mutations exhibit a clear signature of (pseudo)hypoxia and angiogenesis, assigned as ‘cluster 1’ tumors. On the other hand, RET- and NF1-related PGLs, so-called cluster 2 tumors, are characterized by a deregulated RAS/RAF/MAP kinase signaling cascade that is associated with metabolism, translation initiation, and RNA/protein synthesis. Subsets of sporadic tumors were shown to fit either the cluster 1 or 2 profile. Our current findings of overexpression of VEGF in cluster 1 tumors and corroborate these previous findings. The expression of other genes that were suggested to be cluster related, i.e. p57Kip2, slit homolog 3, aquaporin 3, cytochrome b561, and SDHC, was not significantly different between the groups in our study.
Besides by factors mentioned earlier, the expression of HIF1a is also regulated by aHIF, a naturally occurring antisense transcript RNA that forms a double-stranded RNA molecule with the antisense transcript of HIF1a (Thrash-Bingham & Tartof 1999, Uchida et al. 2004). Naturally occurring antisense transcript expression can lead to the downregulation of the sense transcript by RNA interference (Yelin et al. 2003, Chen et al. 2004). Naturally occurring antisense transcript RNAs also exhibit important biological functions in DNA methylation (Tufarelli et al. 2003), genomic imprinting (Rougeulle & Heard 2002), X-chromosome inactivation (Ogawa & Lee 2002), genomic recombination (Bolland et al. 2004), and RNA splicing, polyadenylation, editing, stability, transport, and translation (Mello & Conte 2004, Makalowska et al. 2005). In vitro experiments in renal cell carcinoma cells have yielded insight in the oxygen-dependent regulation of HIF-1α (Thrash-Bingham & Tartof 1999, Uchida et al. 2004). Hypoxic conditions initially induce overexpression of HIF-1α. During sustained hypoxia, however, HIF-1α mRNA decreases in parallel with increased expression of aHIF, suggesting inhibition of HIF-1α by aHIF through a negative feedback loop. Our current finding of increased aHIF expression in parallel with VEGF in SDH- and VHL-related PGL fits a pattern of a chronic (pseudo)hypoxic state. This suggests that aHIF can serve as a surrogate marker of chronic HIF-1α activation, taking into account that measurement of the HIF-1α protein itself is cumbersome.
Besides its involvement in hypoxia-related tumorigenesis, HIF-1α stabilizes the tumor suppressor gene p53 (An et al. 1998). Inhibition of HIF-1α by aHIF during sustained hypoxia results in the loss of p53 and subsequent tumor cell proliferation (Uchida et al. 2004). This aHIF-mediated escape from p53-mediated apoptosis theoretically translates into more aggressive tumor behavior and increased metastatic potential. Overexpression of aHIF has clearly been established in malignant non-papillary clear cell renal carcinoma (Thrash-Bingham & Tart 1999). In breast cancer, overexpression of aHIF was shown to be a marker of poor prognosis (Cayre et al. 2003). In this study, aHIF expression in primary tumors turned out to be a predictor of decreased metastasis-free survival. There are currently no reliable histological criteria for malignant PGL besides the presence of metastatic lesions in locations where chromaffin tissue is normally absent (Linnoila et al. 1990). The 5-year survival of patients with metastatic PGL is ∼50% (Eisenhofer et al. 2004, Timmers et al. 2008), and no cure is available. It is therefore critical to identify biomarkers of malignancy such as aHIF. Besides aHIF, VEGF was also negatively correlated with metastasis-free survival. High expression of cytochrome b561, p57Kip2, slit homolog 3, and SDHC on the other hand was associated with a benign course. These expression profiles of malignant PGL fit those of the cluster 1 tumors. Among cluster 1 tumors, specifically, SDHB mutations are strongly associated with a malignant course, whereas VHL- and SDHD-related PGLs are rarely malignant. Our findings, however, probably do not specifically reflect the SDHB genotype, as only two out of seven patients who developed metastases were known mutation carriers. However, considering the low frequency of malignancy in VHL/SDHD-related tumors, a cluster 1 signature of hypoxia/angiogenesis along with increased aHIF and VEGF expression as observed in our VHL and SDHD samples does not automatically translate into a high malignant potential. The discrepancy in metastatic potential between cluster 1 tumors of different genotypes suggests that other pathophysiological mechanisms besides hypoxia/angiogenesis are involved. Also, we emphasize that the expression of aHIF is highly variable, so it cannot be used as a marker of malignancy in individual patients. It is likely that individual risks of developing metastases can only be estimated by the use of a combination of clinical, biochemical, genetic, and molecular markers (Eisenhofer et al. 2004, Suh et al. 2009). In this context, protein expression of SNAIL, a zinc-finger transcription factor, has been identified as a useful marker of metastatic potential of PGL (Häyry et al. 2009).
Our current study has several limitations. The study includes a limited number of patients with metastatic disease. The role of aHIF as a predictor of malignancy needs to be further evaluated in a larger cohort with a longer follow-up. Also, the role of aHIF as a marker of the upregulation of hypoxic and angiogenic pathways in the tumorigenesis of PGL needs further exploration across tumors of different genotypes, specifically SDHB versus other cluster 1 genotypes. Since the samples that we investigated spanned several decades, the integrity of mRNA could theoretically have decreased over time in the older samples. We did, however, not find such a correlation for aHIF expression. Formal genetic testing was omitted in several patients with apparently sporadic PGL, i.e. in those with a negative family history and lack of syndromal features. In these cases, SDHB immunostaining was used as ‘surrogate’ genotyping. The sensitivity and specificity of this approach awaits prospective evaluation. In conclusion, along with VEGF, the expression of aHIF, a naturally occurring antisense transcript of HIF-1α, is increased in cluster 1 PGL, fitting a profile of pseudohypoxia and angiogenesis. Moreover, overexpression of aHIF and VEGF marks a higher metastatic potential in PGL.
Supplementary data
This is linked to the online version of the paper at http://dx.doi.org/10.1530/ERC-10-0184.
Declaration of interest
The authors declare that there is no conflict of interest that could be perceived as prejudicing the impartiality of the research reported.
Funding
This research did not receive any specific grant from any funding agency in the public, commercial, or not-for-profit sector.
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(J U Rao and S B J Oude Ophuis contributed equally to this work)